OBO Foundry dashboard analysis¶

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/tmp/ipykernel_4022/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

Turtle            25
RDF/XML Syntax    21
OWL/XML Syntax     1
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 46 4996.382979 18107.074227 0.0 168.0 1234.0 3014.5 124680.0
Declaration 46 1163.851064 3310.963199 0.0 95.5 494.0 1019.0 22818.0
SubClassOf 45 1301.234043 3615.063324 0.0 34.5 386.0 1273.5 24611.0
ObjectPropertyDomain 42 36.787234 38.271306 0.0 10.0 23.0 57.0 148.0
ObjectPropertyRange 42 38.489362 38.880459 0.0 13.0 26.0 60.5 150.0
DataPropertyRange 38 12.659574 17.742453 0.0 1.0 5.0 21.0 97.0
SubObjectPropertyOf 38 55.574468 63.884660 0.0 5.0 34.0 78.5 237.0
DataPropertyDomain 36 14.617021 35.913273 0.0 1.0 2.0 13.0 235.0
DisjointClasses 35 277.404255 1788.609706 0.0 0.5 4.0 21.0 12277.0
InverseObjectProperties 34 13.255319 28.161389 0.0 0.0 2.0 11.0 126.0
ClassAssertion 33 112.723404 312.095561 0.0 0.0 3.0 35.5 1815.0
EquivalentClasses 29 46.425532 83.325643 0.0 0.0 3.0 64.0 395.0
SubDataPropertyOf 28 7.808511 12.658797 0.0 0.0 1.0 11.0 63.0
TransitiveObjectProperty 27 4.106383 5.813156 0.0 0.0 1.0 6.0 28.0
SubAnnotationPropertyOf 23 13.425532 35.420913 0.0 0.0 0.0 20.0 228.0
FunctionalDataProperty 19 1.872340 4.321921 0.0 0.0 0.0 2.0 22.0
FunctionalObjectProperty 19 2.723404 4.514239 0.0 0.0 0.0 4.0 17.0
InverseFunctionalObjectProperty 18 1.808511 3.040583 0.0 0.0 0.0 3.0 11.0
SymmetricObjectProperty 18 3.723404 6.758898 0.0 0.0 0.0 7.5 35.0
IrrefexiveObjectProperty 17 3.765957 6.754106 0.0 0.0 0.0 2.0 22.0
AsymmetricObjectProperty 16 3.021277 5.753975 0.0 0.0 0.0 1.5 20.0
AnnotationPropertyRangeOf 16 6.531915 20.348968 0.0 0.0 0.0 2.5 134.0
DisjointUnion 13 6.957447 18.919690 0.0 0.0 0.0 1.0 116.0
ObjectPropertyAssertion 13 101.170213 341.046810 0.0 0.0 0.0 2.5 2051.0
DataPropertyAssertion 12 111.829787 543.130752 0.0 0.0 0.0 1.0 3617.0
ReflexiveObjectProperty 8 0.212766 0.549156 0.0 0.0 0.0 0.0 3.0
SubPropertyChainOf 7 0.978723 3.397501 0.0 0.0 0.0 0.0 19.0
AnnotationPropertyDomain 7 0.170213 0.433346 0.0 0.0 0.0 0.0 2.0
DisjointObjectProperties 6 0.446809 1.529543 0.0 0.0 0.0 0.0 8.0
EquivalentObjectProperties 6 1.340426 5.474354 0.0 0.0 0.0 0.0 36.0
DifferentIndividuals 5 0.361702 1.275616 0.0 0.0 0.0 0.0 6.0
SameIndividual 3 0.659574 2.822862 0.0 0.0 0.0 0.0 17.0
EquivalentDataProperties 3 0.404255 1.702422 0.0 0.0 0.0 0.0 10.0
NegativeObjectPropertyAssertion 2 0.042553 0.204030 0.0 0.0 0.0 0.0 1.0
Rule 1 0.170213 1.166920 0.0 0.0 0.0 0.0 8.0
DisjointDataProperties 1 0.042553 0.291730 0.0 0.0 0.0 0.0 2.0
DatatypeDefinition 1 0.404255 2.771435 0.0 0.0 0.0 0.0 19.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 47 4516.851064 11234.357951 18.0 223.0 1331.0 4722.0 70987.0
ObjectUnionOf 33 15.638298 22.608603 0.0 0.0 6.0 14.0 88.0
ObjectAllValuesFrom 29 20.787234 34.257298 0.0 0.0 5.0 28.5 162.0
ObjectSomeValuesFrom 29 161.723404 321.344709 0.0 0.0 13.0 131.5 1478.0
ObjectIntersectionOf 25 33.276596 93.590157 0.0 0.0 1.0 17.0 470.0
ObjectExactCardinality 24 8.936170 24.026620 0.0 0.0 1.0 5.0 114.0
DataHasValue 18 36.531915 83.662846 0.0 0.0 0.0 37.0 494.0
DataExactCardinality 18 2.170213 3.690877 0.0 0.0 0.0 3.0 14.0
DataAllValuesFrom 16 1.063830 1.904277 0.0 0.0 0.0 2.0 8.0
ObjectComplementOf 14 2.297872 4.990926 0.0 0.0 0.0 3.0 22.0
ObjectHasValue 14 7.340426 24.325936 0.0 0.0 0.0 1.0 121.0
DataSomeValuesFrom 13 1.680851 3.624232 0.0 0.0 0.0 3.0 17.0
ObjectMinCardinality 11 1.340426 4.419702 0.0 0.0 0.0 0.0 28.0
ObjectMaxCardinality 7 19.319149 130.362722 0.0 0.0 0.0 0.0 894.0
ObjectOneOf 7 6.191489 39.487278 0.0 0.0 0.0 0.0 271.0
DataMaxCardinality 3 0.446809 2.500509 0.0 0.0 0.0 0.0 17.0
DataMinCardinality 2 0.042553 0.204030 0.0 0.0 0.0 0.0 1.0

OBO Score (Experimental)

ontology score score_dash score_impact
27 OBO 0.328 0.571 0.085
39 enanomapper 0.285 0.571 0.000
20 MDO 0.285 0.571 0.000
0 AMONTOLOGY 0.285 0.571 0.000
28 OEO 0.285 0.571 0.000
8 EMMO 0.275 0.549 0.000
10 EMMO_BattINFO 0.275 0.549 0.000
13 EMMO_crystallography 0.275 0.549 0.000
4 CHAMEO 0.275 0.549 0.000
11 EMMO_Datamodel 0.264 0.527 0.000
15 EMMO_mechanical_testing 0.264 0.527 0.000
32 SEMMD 0.252 0.504 0.000
14 EMMO_mappings 0.252 0.504 0.000
2 BWMD-MID 0.252 0.504 0.000
1 BWMD-DOMAIN 0.252 0.504 0.000
12 EMMO_atomistic 0.252 0.504 0.000
3 CCO 0.252 0.504 0.000
40 m4i 0.241 0.482 0.000
31 SAREF 0.241 0.482 0.000
25 NPO 0.234 0.467 0.000
6 DEB 0.234 0.467 0.000
16 EMMO_microstructure 0.234 0.467 0.000
34 SO 0.234 0.467 0.000
19 MAMBO 0.234 0.467 0.000
35 SP 0.234 0.467 0.000
5 CIF 0.222 0.444 0.000
30 PMD 0.222 0.444 0.000
24 MaterialsMine 0.222 0.444 0.000
7 DISO 0.222 0.444 0.000
9 EMMO_BVC 0.222 0.444 0.000
26 NanoMine 0.222 0.444 0.000
22 MSEO 0.222 0.444 0.000
17 GPO 0.222 0.444 0.000
23 MatOnto 0.222 0.444 0.000
42 mvc 0.222 0.444 0.000
18 LPBFO 0.219 0.438 0.000
21 MOL_TENSILE 0.208 0.416 0.000
44 opmw 0.200 0.400 0.000
37 WILD 0.200 0.400 0.000
45 periodictable 0.200 0.400 0.000
33 SKOS_MDO 0.200 0.400 0.000
36 SSN 0.189 0.378 0.000
29 OSMO 0.189 0.378 0.000
38 bmo 0.189 0.378 0.000
41 matinfo 0.167 0.333 0.000
46 ssos 0.155 0.311 0.000
43 ontorule 0.155 0.311 0.000

OBO Score Summary

count mean std min 25% 50% 75% max
score 47.0 0.233723 0.036060 0.155 0.2205 0.234 0.252 0.328
score_dash 47.0 0.465489 0.068177 0.311 0.4410 0.467 0.504 0.571
score_impact 47.0 0.001809 0.012399 0.000 0.0000 0.000 0.000 0.085

OBO dependency graph